# Sequence Data

<span id="bkmrk-sequence-data" style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Sequence Data</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> stores the sequencing data files uploaded by the users and displays them in reverse chronological order. Click the</span><span style="font-size: 24pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"><span style="border-width: initial; border-style: none; display: inline-block; overflow: hidden; width: 44px; height: 35px;">![](https://lh6.googleusercontent.com/WMAow0X8Tql_TTEjZiWCZhiLyU0wNFP6tgILZ24H49jhqTBN-zPtB6X4uiWavPnlaAnp-9273ON86dSzDzEyCqlLAm7MzrtWAO-g6Cm5MOXV0CRuCYPN5AvkQWZE0FdbmbD9GLoF)</span></span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> icon in the Utilities menu to access the </span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Sequence Data</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> window (Fig. 1). The paginated window displays 10 samples, by default, per page and can be increased to show 20, 40, 60, 80, 100 samples. The search box (Fig. 1) on the top right corner allows users to filter samples with tags, organism names, or pairing information. Validation failed samples are greyed out and displayed with a “Validation Failed” message. The failed samples are not available for selection and should be deleted from the platform by the user. Validation passed samples are shown with a green check </span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"><span style="border-width: initial; border-style: none; display: inline-block; overflow: hidden; width: 20px; height: 20px;">![](https://lh5.googleusercontent.com/7NE9cdmOYyvqUDs4Z-MbMPFLu046ISR6kdXdo6g7agR4BrRSpB4mzxV9xusgF_FTEfFkzk4ggp42r4iGatDf3bvoTDUk_dYBrwPPwd7BXECgLfVEHHwgckMyNU-_84OOLBb0rXR0)</span></span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">. The quality (fastqc) report is available for the validated samples (Fig. 1).</span>

![Fig. 1. List view of the sequencing files from Sequence Data. a.) Sequence Data tab. b.) Search field. c.) The Fastqc Report](https://docs.stanome.com/uploads/images/gallery/2022-01/embedded-image-b9l2qelk.png)

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">The list view shows eight fields :</span>

- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Name:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> Derived sample name from the file name by the platform</span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: italic; font-variant: normal; white-space: pre-wrap;">Example:</span>

<div id="bkmrk-sequencing-type-file"><table cellpadding="5pt" class=" align-center" style="width: 468pt; border-width: initial; border-style: none;"><colgroup><col></col><col></col><col></col></colgroup><tbody><tr style="height: 0pt;"><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 207.219px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Sequencing Type</span>

</td><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 208.219px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">File Name</span>

</td><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 207.25px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Sample Name</span>

</td></tr><tr style="height: 0pt;"><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 207.219px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Single End</span>

</td><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 208.219px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: italic; font-variant: normal; white-space: pre-wrap;">seq\_file.fastq</span>

</td><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 207.25px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: italic; font-variant: normal; white-space: pre-wrap;">seq\_file</span>

</td></tr><tr style="height: 0pt;"><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 207.219px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Paired End</span>

</td><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 208.219px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: italic; font-variant: normal; white-space: pre-wrap;">seq\_file\_1.fastq</span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: italic; font-variant: normal; white-space: pre-wrap;">seq\_file\_2.fastq</span>

</td><td style="border-width: 1pt; border-color: #000000; vertical-align: top; padding: 5pt; overflow: hidden; overflow-wrap: break-word; width: 207.25px;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: italic; font-variant: normal; white-space: pre-wrap;">seq\_file</span>

</td></tr></tbody></table>

</div>- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Organism:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> Organism name, provided by the user during upload</span>
- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Tag:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> Tag name, provided by the user during upload</span>
- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Fastqc Reports:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> The FastQC quality report of each sample</span>
- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">File(s):</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> The actual file name(s) associated with the sample name</span>
- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Paired:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> Sample pairing information, provided by the user during upload</span>
- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Owner:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> Name of the user, who uploaded the samples</span>
- <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Date:</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> Date of upload</span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;">Additional sample details can be accessed by clicking on the sample name. Click the </span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;"><span style="border-width: initial; border-style: none; display: inline-block; overflow: hidden; width: 21px; height: 23px;">![](https://lh4.googleusercontent.com/Lvjj7mbMRobt0C7pZ_GsUxc1loo_mowP0s3iAFDfOHczLSb1pCeDlsHL0MdHoRKrzxf5qQJFsZN552NLmMJOUEn6dZFvit-lNMpvzkeD4SYB6gAKbvTajer2qHNYlELpL7-MqD4l)</span></span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;"> icon on the top right corner of the sample window (Fig. 2) to delete the selected sample. Click the</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;"><span style="border-width: initial; border-style: none; display: inline-block; overflow: hidden; width: 26px; height: 25px;">![](https://lh6.googleusercontent.com/BFuoOqxFgqjoi0TeXZCZ67HV1_fvXYRj32GzB5iC6ZWnV-29m39CsFM1sHo2aB7hJJphQrNJSG-obVMFwtMMaVbEx6t_G7K1IPB53yTH5fGDFq1fitJno_l8n5mKfv8Y2BWI5wYu)</span></span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;">icon to go back to the </span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #38761d; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal;">Sequence Data</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;"> window.</span></span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"><span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal;">![Fig. 2. Sample (sequence data) window.](https://docs.stanome.com/uploads/images/gallery/2022-01/embedded-image-sw7x6qwq.png)</span></span>