Stanome Apps

Stanome applications (Apps.) are standalone software tools developed by Stanome to serve the diverse downstream genomics analysis needs. Apps functionality ranges widely - from job result comparison to sequence depth analysis to annotations and clinical interpretations. Apps seamlessly communicate between different platform objects (example: Data Store, Jobs). Stanome Apps work similar to the pipelines but are simple to execute, need fewer inputs, run faster, and produce results quickly.

ConcordanceGT

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ConcordanceGT

Execution

Inputs:

Parameters

Running the App:

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ConcordanceGT

Report

Data output:

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Data access:

How can the data be downloaded

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Execution of Stanome Apps

Click image-1642994426282.png(Fig. 2) from any App to open the execution dialog box. Execution requirements vary for each App but generally, three objects are expected - inputs, parameters, and outputs. Select the right objects from the drop-downs and click the Submit button.

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Fig: Execution page of ConcordanceGT app.

 

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Jobs in Stanome Apps

App execution results are displayed similar to the jobs list window in a project and can be accessed by clicking the image-1642998708617.png icon (Fig 3).

Fig. App jobs list view

Fig: App jobs list view.