# Overview

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Data upload is the first step in the analysis. Generally, four data types are required: </span>

1. 1. 1. 1. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Sequencing data (read files)</span>
            2. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Reference genomes</span>
            3. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Annotation files</span>
            4. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Metadata</span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Click the </span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"><span style="border-width: initial; border-style: none; display: inline-block; overflow: hidden; width: 35px; height: 31px;">![](https://lh5.googleusercontent.com/fUWFJPac0bLYeZWQYnBxPKsxcS1eq_6bZmvl6f5qBcZARbq7PhqmtvkEErPDJ-X5huVT_9ROyKmc8JJYf2P8WPrewukziDTra8we9HhU9it7rr_gChYaS5xcrnZidEZtuX3PF1Dh)</span></span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> icon in the Utilities menu to access the </span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: bold; font-style: normal; font-variant: normal; white-space: pre-wrap;">Uploader</span><span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;"> window. Each data type is uploaded from a separate tab and follows the following three high-level steps:</span>

1. 1. 1. 1. 1. 1. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Define the data types with correct tags</span>
                    2. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Verify and check for its existence in users account, format, and name conflicts</span>
                    3. <span style="font-size: 12pt; font-family: Montserrat, sans-serif; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Upload</span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">Pre-configured references and annotation files are available for the model organisms.</span>

<span style="font-size: 12pt; font-family: Montserrat, sans-serif; color: #232a3c; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; white-space: pre-wrap;">![FigData upload interface - each tab allows uploading of different data types to the data store. A: Sequence data B: References C: Annotations D: Metadata.. ](https://docs.stanome.com/uploads/images/gallery/2022-01/embedded-image-o929wdon.png)</span>