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De novo pipeline building requires bioinformatics expertise. Please contact the technical support team for assistance. The creation of a brand new pipeline is more challenging than copying an existing pipeline. Fill in the following details on the pipeline cr...

Once a pipeline is successfully created and validated within a project, it's ready for execution. A newly created pipeline is shown in Fig. 1.   The following actions are allowed on the Pipeline window: view/delete/edit/initialize. Pipeline deletion ...

Completed or unfinished pipeline runs are listed in the jobs table on the Jobs window (Fig. 1).     Click on the jobID to access job details. Overview tab lists details of Pipeline run i.e. Job ID, pipeline name and sample set, start and end time of exec...

Each pipeline execution generates an HTML report. The final report and other files can be accessed through the Reports window (Fig.). Reports can also be accessed through the ReportID on the job details page.   Click Report ID to access intermediate files ...

Variant calling pipelines contains two exclusive sections.   Mapping This section provides details of the abundance/mapping statistics. This section also has three sub-sections:This Data Table: This (Fig. 1) shows several alignment statistics such as th...

This report contains three exclusive sections.  Mapping (Salmon/Kallisto):  This section provides details of the abundance/mapping statistics. This section also has two sub-sections: Data Table: This shows several quasi-alignment statistics such as the ...

Who can use the Stanome platform? Anyone who has NGS data to be analyzed can take advantage of the platform. The user does not need hardware resources or computational knowledge of NGS tools to use the Stanome platform. Which browsers and operating systems...

Adding a New OrganismClick on settings icon from the right upper corner. Select  from the left menu bar. Create a new organism by clicking icon. Fill in the required information and click  icon to save it.

Step 1 : Upload samples and other required files through "Uploader". Each file will go through the validation process. Check the DataStore to verify the status of the uploaded files.  Step 2 : Create yours first project using Projects from the left menu. Ste...

Inputs: Parameters Running the App: explain the detais with figures

Data output: Provide explanations Data access: How can the data be downloaded