UPLOAD REFERENCES
The latest versions of reference genomes and transcriptomes are available on the platform for eight model organisms. Pre-configured references can be explored through REFERENCES (Fig.). The owner column helps to identify the pre-configured references (owned by Stanome) from the custom references (owned by the users).
Click the REFERENCES tab on the Upload window to upload genome and transcriptome files.
Complete all the fields in the form before selecting the files.
- Add to Existing: Helps to add additional files such as transcriptome/genome. to an existing genome/transcriptome. This is an optional parameter (Default: No).
- Organism*: Select the organism name.
- Version*: Provide Genome Build (version) name or the number of the reference file(s). This will help to select the correct reference version during analysis.
HINT - Allowed formats for genome or transcriptome files are fa, fasta, fna, and their compressed formats. Each file should be compressed separately.
Following actions are performed on the uploaded references:
- Uncompression of the files
- Validation of the format and integrity of the file
- Registration into the REFERENCES
- Status notification through email
Successfully uploaded reference files are stored in the REFERENCES. Custom references can be deleted using on the reference details window.
