PROJECT MANAGEMENT
Self-contained mini-workspaces, where sample sets can be analyzed independently without interference from other data, using multiple pipelines.
SAMPLE SET MANAGEMENT
Sample Set is a group of sequence files that belong to an experiment and can be analyzed together...
Project Setup
A new project can be created in two ways. From the Dashboard window - click the icon From the ...
Pipeline Management
A set of computational tools, which run either sequentially or parallelly in order to achieve a s...
Favorites Pipelines
Pipelines, from any project, can be added or deleted from the favorites by clicking the icon nex...
My Pipelines
My Pipelines show the list of pipelines within a project. Pipelines can be created, viewed, edite...
Pipeline Creation
The new pipeline creation window is accessed from two locations. Either click on the project win...
Pipeline Filters
Pipelines on the platform are tightly connected with the projects. The Data type field in the pro...
Copy Pipeline
A new pipeline can be created by copying an existing pipeline from other projects or a pre-config...
De Novo Pipeline
De novo pipeline building requires bioinformatics expertise. Please contact the technical support...
Pipeline Execution
Once a pipeline is successfully created and validated within a project, it's ready for execution....
Reports
Results of a pipeline execution are aggregated into easily understandable formats for quick viewing.
Overview
Each pipeline execution generates an HTML report. The final report and other files can be accesse...
Variant Report
Variant calling pipelines contains two exclusive sections. Mapping This section provides deta...
Transcript Report
This report contains three exclusive sections. Mapping (Salmon/Kallisto): This section provid...
Jobs
Completed or unfinished pipeline runs are listed in the jobs table on the Jobs window (Fig. 1). ...